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Researchers Elucidate Mechanism of REV7 Recruitment by SHLD3 During DNA Double-strand Break Repair

Jan 06, 2020

DNA double-strand breaks (DSBs) are extremely vicious DNA lesions that may cause carcinogenesis or cell death if not properly repaired. In vertebrate cells, two main repair pathways, non-homologous end-joining (NHEJ) and homologous recombination (HR), are employed in eliminating the cytotoxic DSBs and thereby ensuring genomic integrity. The decision-making process of repair pathways is a critical step during DSB response, which is spearheaded by 53BP1 and its downstream effectors.
A recently characterized four-subunit complex, named Shieldin, acts downstream 53BP1 to protect DNA end from resection and facilitate NHEJ repair. SHLD3 is the most apical subunit within complex and it constitutes the DSB recruitment module of Shieldin along with REV7. SHLD3 and REV7 are essential for correct localization of Shieldin at DSB sites. But how they interact with one another remains unknown.

A new study, conducted by Dr. ZHOU Zheng’s group from the Institute of Biophysics of the Chinese Academy of Sciences and Dr. GONG Zihua’s group from Cleveland Clinic Lerner Research Institute, has revealed the underlying mechanism. This study, published online in Journal of Biological Chemistry, enhances the understanding of how the DSB recruitment module assembles within Shieldin complex.

In this study, after several rounds of screening, Dr. ZHOU’s team firstly identified the minimal REV7-binding domain (RBD) in SHLD3. Through Isothermal Titration Calorimetry (ITC), SHLD3-RBD was shown to have a high-affinity binding ability to REV7 (with low-nanomolar affinity).

The researchers then assembled stable SHLD3-REV7 complex and determined high-resolution complex structures by using X-ray crystallography. The structures revealed that SHLD3-RBD binds REV7 in a unique ladle-shaped conformation with its N-terminal loop and C-terminal α-helix (αC-helix) acting as “stem” and “base”, respectively. Through extensive in vitro and in vivo binding analyses, they found that both parts of SHLD3-RBD are indispensable for REV7 recognition.

In addition, via surface plasmon resonance (SPR) assay, the researchers presented a binding kinetic view of REV7-SHLD3 interaction. The results showed that the “safety-belt” region, which plays a role in binding other proteins, is essential for SHLD3-REV7 binding, as this region retards the dissociation of the RBD from the bound REV7.

This study revealed the molecular basis of the SHLD3-REV7 interaction, provided critical insights into how SHLD3 recruits REV7, and paved the way for medicine development towards cancer treatment.

The staff of the BL-17U1 and BL-19U1 beamlines at the Shanghai Synchrotron Radiation Facility and the Institute of Biophysics have provided technical support to this work.

 

Overall structure of SHLD3-REV7 complex and their roles in DSB repair (Image by Dr. ZHOU Zheng’s lab)

Contact

ZHOU Zheng

Institute of Biophysics

E-mail:

Structural basis for shieldin complex subunit 3–mediated recruitment of the checkpoint protein REV7 during DNA double-strand break repair

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